PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G227700.1.p
Common NameGLYMA_08G227700, LOC100789774
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family AP2
Protein Properties Length: 427aa    MW: 48188.1 Da    PI: 6.4641
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G227700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.11.7e-1655114155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+GV++++++gr++A+++d  s+n+   k+ k+++lg ++t+e Aa+ ++ a++k++g
  Glyma.08G227700.1.p  55 SIYRGVTRHRWTGRFEAHLWDkSSWNNiqsKKgKQVYLGAYDTEESAARTYDLAALKYWG 114
                          57*******************777799987557*************************98 PP

2AP250.16.6e-16157208155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s+y+GV +++ +grW+A+I  ++    +k+ +lg++ t eeAa a++ a+ +++g
  Glyma.08G227700.1.p 157 SKYRGVARHHHNGRWEARIGRVCG---NKYLYLGTYKTQEEAAVAYDMAAIEYRG 208
                          89****99***********99644...4*************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.55E-2255123No hitNo description
PfamPF008471.0E-1255114IPR001471AP2/ERF domain
SuperFamilySSF541712.75E-1755124IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.9E-1756122IPR001471AP2/ERF domain
SMARTSM003801.6E-2656128IPR001471AP2/ERF domain
PROSITE profilePS5103220.86356122IPR001471AP2/ERF domain
PRINTSPR003675.5E-65768IPR001471AP2/ERF domain
CDDcd000184.80E-24157218No hitNo description
PfamPF008471.1E-10157208IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-17157218IPR016177DNA-binding domain
PROSITE profilePS5103218.123158216IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.9E-18158216IPR001471AP2/ERF domain
SMARTSM003801.7E-26158222IPR001471AP2/ERF domain
PRINTSPR003675.5E-6198218IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MKRSPASSCS SSTSSVGFEV HHPIEKRRPK HPRRNNLKSQ KCKQNQTTTG GRRSSIYRGV  60
TRHRWTGRFE AHLWDKSSWN NIQSKKGKQV YLGAYDTEES AARTYDLAAL KYWGKDATLN  120
FPIETYTKDL EEMDKVSREE YLASLRRQSS GFSRGISKYR GVARHHHNGR WEARIGRVCG  180
NKYLYLGTYK TQEEAAVAYD MAAIEYRGVN AVTNFDISNY MDKIKKKNDQ TLQQQQTEVQ  240
TETVPNSSDS EEAEVEQQHT TTITTPPPSE NLHMLPQEHQ VQYTHHVTPR DEESSSLVTI  300
MEHVLEQDLP WSFMYTGLSQ FQDPNLALSK GDDDLAGMFD GAGFEEDIDF LFSTQPGDHE  360
TESDVNNMSA VLDSVECGDT NGAGGRSMVY HHVDNNNKQK KMLSFASSSS PSSTTTTVSC  420
DYALDL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.368541e-116somatic embryo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2200510.0GU220051.1 Glycine max wrinkled 1 (WRI1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006585696.10.0PREDICTED: ethylene-responsive transcription factor WRI1-like
SwissprotQ6X5Y61e-110WRI1_ARATH; Ethylene-responsive transcription factor WRI1
TrEMBLI1KVX70.0I1KVX7_SOYBN; Uncharacterized protein
STRINGGLYMA08G24420.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98593241
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.31e-108AP2 family protein